Commit c61a9725 authored by Gonzalo S Nido's avatar Gonzalo S Nido
Browse files

Fixed absolute path

parent 8cab38ea
......@@ -316,7 +316,8 @@ if [[ $SUBSET != 0 ]]; then
fi
opts="${opts}-s $STRATEGIES "
PIPELINE_CMD="bash /home/gsnido/wgbs-pipeline/wgbs-pipeline.sh${opts}${R1[*]} ${R2[*]}"
PIPELINE_DIR=`dirname $0`
PIPELINE_CMD="bash ${PIPELINE_DIR}/wgbs-pipeline.sh${opts}${R1[*]} ${R2[*]}"
echo ">> RUNNING THE PIPELINE..."
echo " CMD = \"${PIPELINE_CMD}\""
${PIPELINE_CMD}
......@@ -338,7 +339,7 @@ if [[ $SHRINK > 0 ]]; then
az storage share update --name ${shareNameResults} --account-name ${storageAccountResults} --account-key ${storageAccountKeyResults} --quota ${size}
else
echo " * Fileshare in storage account left with 3G quota"
echo " * Fileshare in storage account left with original quota"
fi
echo
......
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