Commit b44f46f5 authored by Gonzalo S Nido's avatar Gonzalo S Nido
Browse files

Added trimmomatic installation

parent ce340269
......@@ -55,6 +55,23 @@ sudo chmod 777 /opt/fastqc-0.11.9/fastqc
sudo ln -s /opt/fastqc-0.11.9/fastqc /usr/local/bin/fastqc-0.11.9
sudo ln -s /usr/local/bin/fastqc-0.11.9 /usr/local/bin/fastqc
rm -r ./FastQC
cd ~
echo "#### Installing Trimmomatic..."
cd ~
wget http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.39.zip
unzip Trimmomatic-0.39.zip
rm Trimmomatic-0.39.zip
sudo cp -r Trimmomatic-0.39 /opt/
rm -r Trimmomatic-0.39
echo 'java -jar /opt/Trimmomatic-0.39/trimmomatic-0.39.jar $*' | sudo tee /usr/local/bin/trimmomatic-0.39
sudo chmod 775 /usr/local/bin/trimmomatic-0.39
sudo ln -s /usr/local/bin/trimmomatic-0.39 /usr/local/bin/trimmomatic
echo "Installing R..."
sudo apt -y install r-base
......
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