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Gonzalo S Nido
wgbs-pipeline
Commits
abca2299
Commit
abca2299
authored
Aug 07, 2020
by
Gonzalo S Nido
Browse files
Bug fix
parent
4123e0f2
Changes
1
Hide whitespace changes
Inline
Side-by-side
wgbs-pipeline.sh
View file @
abca2299
...
...
@@ -193,7 +193,7 @@ CMD="${samtools} merge -n -r -@ 32 ${output_dir}/b38_${sample_id}.bam ${bamfile_
echo
-e
${
CMD
}
>
${
log_dir
}
/1_2_merge.cmd
if
$MONITOR
;
then
echo
-e
"
\n
"
${
psrecord
}
"bash
${
log_dir
}
/1_2_
aln
.cmd"
--log
${
log_dir
}
/1_2_merge.resources
--interval
60
--include-children
${
psrecord
}
"bash
${
log_dir
}
/1_2_
merge
.cmd"
--log
${
log_dir
}
/1_2_merge.resources
--interval
60
--include-children
else
bash
${
log_dir
}
/1_2_merge.cmd
fi
...
...
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