Commit 7ab4ed09 authored by Gonzalo S Nido's avatar Gonzalo S Nido
Browse files

Delete non-deduplicated bam file to save tons of space

parent f91f0e2d
......@@ -278,6 +278,9 @@ if [ -s "${output_dir}/b38_${sample_id}.deduplicated.bam" ]; then
mv ${output_dir}/b38_${sample_id}.deduplicated.bam ${output_dir}/b38_${sample_id}.dedup.bam
fi
if [ -s "${output_dir}/b38_${sample_id}.dedup.bam" ]; then
rm ${output_dir}/b38_${sample_id}.bam
fi
echo -ne " 1.4 Extracting methylation... "
......
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