Delete non-deduplicated bam file to save tons of space

wgbs-pipeline.sh

@@ -278,6 +278,9 @@ if [ -s "${output_dir}/b38_${sample_id}.deduplicated.bam" ]; then
     mv ${output_dir}/b38_${sample_id}.deduplicated.bam ${output_dir}/b38_${sample_id}.dedup.bam
 fi
 
+if [ -s "${output_dir}/b38_${sample_id}.dedup.bam" ]; then
+    rm ${output_dir}/b38_${sample_id}.bam
+fi
 
 echo -ne "     1.4 Extracting methylation... "