Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Gonzalo S Nido
wgbs-pipeline
Commits
3e37d5d1
Commit
3e37d5d1
authored
Sep 04, 2020
by
Gonzalo S Nido
Browse files
Update wgbs-pipeline.sh
parent
47f189f5
Changes
1
Hide whitespace changes
Inline
Side-by-side
wgbs-pipeline.sh
View file @
3e37d5d1
...
...
@@ -659,8 +659,8 @@ CMD="${bismark_meth_extract} -p --comprehensive --output ${output_dir} \
--gzip --multicore
${
cpus
}
\
--samtools_path
${
samtools_path
}
\
${
output_dir
}
/umap_to_MT_
${
sample_id
}
.dedup.bam >
\
${
log_dir
}
/3_
7
_meth.stdout 2>
\
${
log_dir
}
/3_
7
_meth.stderr"
${
log_dir
}
/3_
6
_meth.stdout 2>
\
${
log_dir
}
/3_
6
_meth.stderr"
echo
-e
${
CMD
}
>
${
log_dir
}
/3_6_meth.cmd
if
$MONITOR
;
then
echo
-ne
"
\n
"
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment