Commit 3e37d5d1 authored by Gonzalo S Nido's avatar Gonzalo S Nido
Browse files

Update wgbs-pipeline.sh

parent 47f189f5
......@@ -659,8 +659,8 @@ CMD="${bismark_meth_extract} -p --comprehensive --output ${output_dir} \
--gzip --multicore ${cpus} \
--samtools_path ${samtools_path} \
${output_dir}/umap_to_MT_${sample_id}.dedup.bam > \
${log_dir}/3_7_meth.stdout 2> \
${log_dir}/3_7_meth.stderr"
${log_dir}/3_6_meth.stdout 2> \
${log_dir}/3_6_meth.stderr"
echo -e ${CMD} > ${log_dir}/3_6_meth.cmd
if $MONITOR; then
echo -ne "\n "
......
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