Commit 39dc104d authored by Gonzalo S Nido's avatar Gonzalo S Nido
Browse files

Yet another mistake

parent f309da16
......@@ -9,9 +9,9 @@ PIPELINEPATH="$( cd "$(dirname "$0")" > /dev/null 2>&1 ; pwd -P )"
# Reference genome (with Bismark indices and stuff
ref_dir="${PIPELINEPATH}/ref"
b38_ref=$( realpath ${ref_dir}/GRCh38/ )
nuc_ref=$( realpath ${ref_dir}/GRCh38_no_mt/ )
mt_ref=$( realpath ${ref_dir}/chrM/ )
b38_ref="${ref_dir}/GRCh38"
nuc_ref="${ref_dir}/GRCh38_no_mt"
mt_ref="${ref_dir}/chrM"
......
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