Explore projects

Code for the manuscript "Single-nucleus transcriptomics reveals disease- and pathology-specific signatures in alpha-synucleinopathies" (Nido et al. 2023)

https://medrxiv.org/cgi/content/short/2023.10.10.23296642v1

Raw data: https://www.synapse.org/#!Synapse:syn52660694

sms-seq code and figures

Monitors, loggs and generate of 2D line plots using a Raspberry Pi 1-wire temperature sensors. Written in PHP and R.

R script for BIO299 - Bluemouth project

mtDNA mappability changes following bisulfite treatment Association between methylation and depth

Analysis of cardiomyocite differentiation

Source code for the paper "Ultra-deep whole genome bisulfite sequencing reveals a single methylation hotspot in human brain mitochondrial DNA"

Source code for the paper "Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition"

Deletions in urine sediment of patients with mitochondrial deletions

Species distribution models for ArtsApp. Based on https://github.com/joechip90/ArtsApp/ by Joseph Chipperfield.