Explore projects

sms-seq code and figures

Code for the manuscript "Single-nucleus transcriptomics reveals disease- and pathology-specific signatures in alpha-synucleinopathies" (Nido et al. 2023)

https://medrxiv.org/cgi/content/short/2023.10.10.23296642v1

Raw data: https://www.synapse.org/#!Synapse:syn52660694

Run RASflow on real data

Source code for the paper "Ultra-deep whole genome bisulfite sequencing reveals a single methylation hotspot in human brain mitochondrial DNA"

mtDNA mappability changes following bisulfite treatment Association between methylation and depth

Deletions in urine sediment of patients with mitochondrial deletions

Modeling material for Fish under stress research school and workshop @ Runde, June 2019.

Modeling material for Fish under stress research school and workshop @ Runde, June 2019.

Source code for the paper "Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition"

Analysis of cardiomyocite differentiation